The Latin America Early Career Earth System Scientist Network (LAECESS): addressing present and future challenges of the upcoming generations of scientists in the region.

Early career (EC) Earth system scientists in the Latin America and the Caribbean region (LAC) have been facing several issues, such as limited funding opportunities, substandard scientific facilities, lack of security of tenure, and unrepresented groups equality issues. On top of this, the worsening regional environmental and climatic crises call for the need for this new generation of scientists to help to tackle these crises by increasing public awareness and research. Realizing the need to converge and step up in making a collective action to be a part of the solution, the Latin America Early Career Earth System Scientist Network (LAECESS) was created in 2016. LAECESS's primary goals are to promote regional networking, foster integrated and interdisciplinary science, organize soft skills courses and workshops, and empower Latin American EC researchers. This article is an initial step towards letting the global science community grasp the current situation and hear the early career LAC science community's perspectives. The paper also presents a series of future steps needed for better scientific and social development in the LAC region.

Q-CHAT-NAO: A robotic approach to autism screening in toddlers.

The use of humanoid robots as assistants in therapy processes is not new. Several projects in the past several years have achieved promising results when combining human-robot interaction with standard techniques. Moreover, there are multiple screening systems for autism; one of the most used systems is the Quantitative Checklist for Autism in Toddlers (Q-CHAT-10), which includes ten questions to be answered by the parents or caregivers of a child. We present Q-CHAT-NAO, an observation-based autism screening system supported by a NAO robot. It includes the six questions of the Q-CHAT-10 that can be adapted to work in a robotic context; unlike the original system, it obtains information from the toddler instead of from an indirect source. The detection results obtained after applying machine learning models to the six questions in the Autistic Spectrum Disorder Screening Data for Toddlers dataset were almost equivalent to those of the original version with ten questions. These findings indicate that the Q-CHAT-NAO could be a screening option that would exploit all the benefits related to human-robot interaction.

An overview of graph databases and their applications in the biomedical domain.

Over the past couple of decades, the explosion of densely interconnected data has stimulated the research, development and adoption of graph database technologies. From early graph models to more recent native graph databases, the landscape of implementations has evolved to cover enterprise-ready requirements. Because of the interconnected nature of its data, the biomedical domain has been one of the early adopters of graph databases, enabling more natural representation models and better data integration workflows, exploration and analysis facilities. In this work, we survey the literature to explore the evolution, performance and how the most recent graph database solutions are applied in the biomedical domain, compiling a great variety of use cases. With this evidence, we conclude that the available graph database management systems are fit to support data-intensive, integrative applications, targeted at both basic research and exploratory tasks closer to the clinic.

Integrative Base Ontology for the Research Analysis of Alzheimer's Disease-Related Mild Cognitive Impairment.

Early detection of mild cognitive impairment (MCI) has become a priority in Alzheimer's disease (AD) research, as it is a transitional phase between normal aging and dementia. However, information on MCI and AD is scattered across different formats and standards generated by different technologies, making it difficult to work with them manually. Ontologies have emerged as a solution to this problem due to their capacity for homogenization and consensus in the representation and reuse of data. In this context, an ontology that integrates the four main domains of neurodegenerative diseases, diagnostic tests, cognitive functions, and brain areas will be of great use in research. Here, we introduce the first approach to this ontology, the Neurocognitive Integrated Ontology (NIO), which integrates the knowledge regarding neuropsychological tests (NT), AD, cognitive functions, and brain areas. This ontology enables interoperability and facilitates access to data by integrating dispersed knowledge across different disciplines, rendering it useful for other research groups. To ensure the stability and reusability of NIO, the ontology was developed following the ontology-building life cycle, integrating and expanding terms from four different reference ontologies. The usefulness of this ontology was validated through use-case scenarios.

Dataset supporting the estimation and analysis of high spatial resolution inventories of atmospheric emissions from several sectors in Argentina.

This data article provides an extensive and complete description of the high spatial resolution inventory (HSRI) estimation shown in the article "High resolution inventory of atmospheric emissions from livestock production, agriculture, and biomass burning sectors of Argentina" Puliafito et al. [1], and its comparison with several sectors in Argentina. The dataset provided are high-resolution inventories (0.025° × 0.025° lat/long) for CO2, CH4, N2O and another 8 species from livestock, biomass burning, agriculture and another 12 sectors (based on 2016 year). In addition, we also provide the database for 2014 using the same methodology. The dataset presented are necessary to improve input inventories for air quality models. Also, they are better to inform and guide the stakeholders, in making decisions related to environmental protection and health promotion, as well as assessing the environmental performance in terms of atmospheric emissions of an activity, sector or region in Argentina.

Agricultural impacts on streams near Nitrate Vulnerable Zones: A case study in the Ebro basin, Northern Spain.

Agricultural intensification during the last century has caused river degradation across Europe. From the wide range of stressors derived from agricultural activities that impact rivers, diffuse agricultural pollution has received most of the attention from managers and scientists. The aim of this study was to determine the main stressors exerted by intensive agriculture on streams around Nitrate Vulnerable Zones (NVZs), which are areas of land that drain into waters polluted by nitrates according to the European Nitrate Directive (91/676/EEC). The study area was located in the NW of La Rioja (Northern Spain), which has some of the highest nitrate concentrations within the Ebro basin. The relationships between 40 environmental variables and the taxonomic and functional characteristics of the macroinvertebrate assemblages (which are useful indicators of water quality) were analyzed in 11 stream reaches differentially affected by upstream agricultural activity. The streams affected by a greater percentage of agricultural land cover in the surrounding catchment had significantly higher nitrate concentrations than the remaining sites. However, hydromorphological alteration (i.e. channel simplification, riparian forest and habitat degradation), which is closely linked to agricultural practices, was the main factor affecting macroinvertebrate assemblages. We suggest that "good agricultural practices" should be implemented in streams affected by NVZs to reverse stream degradation, in concordance with the European Water Framework Directive (WFD).

Extending XNAT Platform with an Incremental Semantic Framework.

Informatics increases the yield from neuroscience due to improved data. Data sharing and accessibility enable joint efforts between different research groups, as well as replication studies, pivotal for progress in the field. Research data archiving solutions are evolving rapidly to address these necessities, however, distributed data integration is still difficult because of the need of explicit agreements for disparate data models. To address these problems, ontologies are widely used in biomedical research to obtain common vocabularies and logical descriptions, but its application may suffer from scalability issues, domain bias, and loss of low-level data access. With the aim of improving the application of semantic models in biobanking systems, an incremental semantic framework that takes advantage of the latest advances in biomedical ontologies and the XNAT platform is designed and implemented. We follow a layered architecture that allows the alignment of multi-domain biomedical ontologies to manage data at different levels of abstraction. To illustrate this approach, the development is integrated in the JPND (EU Joint Program for Neurodegenerative Disease) APGeM project, focused on finding early biomarkers for Alzheimer's and other dementia related diseases.

Bio-psycho-social correlates of the perceived crowding in different contexts / Correlatos bio-psico-sociales del hacinamiento percibido en diferentes contextos

BACKGROUND: This paper analyzes the experience of crowding through a biopsychosocial approach to human behavior which empirically joins different dimensions that the literature has analyzed separately. The main aim consists of identifying factors involved in perceived crowding from (a) the emotional response and affective meaning (BIO dimension); (b) the perception of psychological well-being and personality traits (PSYCHO dimension), and (c) sociodemographic characteristics (SOCIO dimension). METHOD: 761 adults completed an online questionnaire that included an assessment of images representing four high- and low-density functional and residential contexts. The data were analyzed through four hierarchical regressions, one for each spatial context. RESULTS: Although the results vary depending on the contexts analyzed, the prevalence of the variables from the BIO dimension in functional contexts, as opposed to residential contexts, is highlighted. The latter spaces show greater heterogeneity regarding the explanatory power of the experience of crowding. CONCLUSIONS: The response to crowding experienced in residential environments shows a greater range of variables involved, supporting the idea of these spaces' greater complexity, insofar as they are psychologically adaptive

ANTECEDENTES: esta investigación analiza la experiencia de hacinamiento mediante una perspectiva bio-psico-social del comportamiento humano que contemple distintas dimensiones que la literatura ha analizado empíricamente de forma independiente. El objetivo principal consiste en identificar factores implicados en el hacinamiento percibido provenientes de: a) la respuesta emocional y el significado afectivo (dimensión BIO); b) la percepción del bienestar psicológico y los rasgos de personalidad (dimensión PSICO); y c) las características sociodemográficas (dimensión SOCIO). MÉTODO: 761 adultos respondieron a un cuestionario online que incluía la evaluación de imágenes representativas de cuatro contextos funcionales y residenciales de alta y baja densidad. Los datos fueron analizados a través de cuatro regresiones jerárquicas, una por cada contexto espacial. RESULTADOS: aunque los resultados varían en función de los contextos analizados, cabe destacar la prevalencia de variables provenientes de la dimensión BIO en contextos funcionales frente a los residenciales. Estos últimos muestran mayor heterogeneidad en la capacidad explicativa de la experiencia de hacinamiento. CONCLUSIONES: la respuesta a la experiencia del ambiente en los espacios residenciales muestra una mayor amplitud de variables implicadas en la vivencia, percepción y adaptación a estos entornos, reforzando la idea de una mayor complejidad de estos espacios, en tanto que psicológicamente adaptativos

Bio-psycho-social correlates of the perceived crowding in different contexts.

BACKGROUND: This paper analyzes the experience of crowding through a biopsychosocial approach to human behavior which empirically joins different dimensions that the literature has analyzed separately. The main aim consists of identifying factors involved in perceived crowding from (a) the emotional response and affective meaning (BIO dimension); (b) the perception of psychological well-being and personality traits (PSYCHO dimension), and (c) sociodemographic characteristics (SOCIO dimension). METHOD: 761 adults completed an online questionnaire that included an assessment of images representing four high- and low-density functional and residential contexts. The data were analyzed through four hierarchical regressions, one for each spatial context. RESULTS: Although the results vary depending on the contexts analyzed, the prevalence of the variables from the BIO dimension in functional contexts, as opposed to residential contexts, is highlighted. The latter spaces show greater heterogeneity regarding the explanatory power of the experience of crowding. CONCLUSIONS: The response to crowding experienced in residential environments shows a greater range of variables involved, supporting the idea of these spaces’ greater complexity, insofar as they are psychologically adaptive.

Affective assessment of high and low-density residential and functional environments / Valoración afectiva de ambientes residenciales y funcionales de alta y baja densidad

This paper contrasts high and low-density residential and functional environments through an assessment of the pleasure and arousal said environments elicit. The relationships between these affective dimensions and a measure of emotional well-being and personality traits are also explored. Two hundred thirty-eight university students assessed the degree of pleasure and arousal elicited by a series of images depicting high and lowdensity residential and functional environments. The findings clearly reveal that residential environments produce more pleasurable feelings than functional spaces, regardless of their density. However, as regards arousal, the feelings produced by residential and functional environments vary on depending on their density. It concludes that residential environments are more adaptable environments in terms of emotional well-being

El presente trabajo contrasta ambientes residenciales versus funcionales de alta y baja densidad a través de la valoración del agrado y la activación que dichos ambientes elicitan. Así mismo se exploran las relaciones entre estas dimensiones afectivas y una medida de bienestar emocional y rasgos de personalidad. 238 estudiantes universitarios valoraron el nivel de agrado y activación elicitado por una serie de imágenes que representaban ambientes residenciales y funcionales de alta y baja densidad. Los resultados ponen de manifiesto que, independientemente de la densidad, los ambientes residenciales generan sentimientos más agradables que los espacios funcionales; no obstante, y en relación con la activación, los sentimientos generados por ambientes residenciales y funcionales, varían en función de la densidad. Se concluye que los ambientes residenciales se constituyen en entornos más adaptativos en términos de bienestar emocional

The Dissociation between Polarity, Semantic Orientation, and Emotional Tone as an Early Indicator of Cognitive Impairment.

The present study aims to identify early cognitive impairment through the efficient use of therapies that can improve the quality of daily life and prevent disease progress. We propose a methodology based on the hypothesis that the dissociation between oral semantic expression and the physical expressions, facial gestures, or emotions transmitted in a person's tone of voice is a possible indicator of cognitive impairment. Experiments were carried out with phrases, analyzing the semantics of the message, and the tone of the voice of patients through unstructured interviews in healthy people and patients at an early Alzheimer's stage. The results show that the dissociation in cognitive impairment was an effective indicator, arising from patterns of inconsistency between the analyzed elements. Although the results of our study are encouraging, we believe that further studies are necessary to confirm that this dissociation is a probable indicator of cognitive impairment.

Emisiones biogénicas de monoterpenos en el parque nacional natural Tayrona, santa marta (Colombia) / Monoterpenes ioggenic emissions in the tayrona natural park, santa marta (Colombia)

Los monoterpenos y otros compuestos orgánicos volátiles emitidos por la vegetación (emisiones biogénicas) juegan un papel significativo en la química troposférica por su participación en la formación de oxidantes fotoquímicos (p.e. ozono troposférico). Es así como la estimación de emisiones biogénicas resulta útil para establecer valores aproximados de la concentración, fundamental en la elaboración de programas de mejoramiento de calidad del aire. El objetivo del trabajo consistió en estimar las emisiones biogénicas de monoterpenos en el Parque Nacional Natural Tayrona, seleccionado por contar con áreas de vegetación autóctona de la región tropical con escasa o nula intervención antropogénica. Se aplicaron sensores remotos para la clasificación de cobertura vegetal, obteniendo la distribución espacial de la vegetación típica e identificando las familias de mayor dominancia. Las emisiones de monoterpenos se calcularon en 3,54 x 10(4) kg d-1, representadas 60% por la familia Leguminosae, 37,4% por la familia Euphorbiaceae, 2,4% por la familia Anacardiaceae y menos de 1% por las familias Rubiaceae y Polygonaceae. Durante las horas de sol en el área del parque (de las 6 a las 18 horas) se registraron las mayores temperaturas diarias y las más altas tasas de emisión de monoterpenos (59,6%); la cuarta parte de las emisiones ocurren entre las 10 y las 15 horas (24,2%), periodo en el que la radiación solar presenta máximos diarios y establece condiciones críticas para la formación de oxidantes fotoquímicos. La influencia de los vientos en la distribución espacio-temporal de las emisiones en el ambiente y la información de la rosa de vientos, evidencia que el 26% de las masas de aire proceden del N y el 15% del NE en el último trimestre del año, situación que podría favorecer la dispersión de monoterpenos a centros urbanos próximos al parque natural, pudiendo alterar la química atmosférica local con la formación de oxidantes fotoquímicos.

Monoterpenes and other volatile organic compounds emitted by vegetation (biogenic emissions) play a significant role in tropospheric chemistry because of their participation in the formation of photochemical oxidants (i.e. troposfheric ozone). This is how the estimation of biogenic emissions is useful for determining approximate values of monoterpenes concentration, which is essential in developing programs to improve air quality. The aim of this work was to estimate biogenic emissions of monoterpenes in the Tayrona National Park, that was selected because of the presence of native vegetation of the tropics with little or no human interference. Remote sensing was applied for classification of vegetation, coverage obtaining the spatial distribution of the typical vegetation and identifying the most dominant families. Monoterpenes emissions were estimated at 3.54 x 104 kg d-1, represented 60% of the Leguminosae family, 37.4% of the Euphorbiaceae family, 2.4% of the Anacardiaceae family and less than 1% of Rubiaceae and Polygonaceae families. During daylight hours in the park area (from 6:00 a.m. to 6:00 p.m.) the highest daily temperatures were registered and the highest emission rates of monoterpenes (59.6%); one fourth of the emissions occur between 10:00 a.m. and 3:00 p.m. (24.2%), period in which solar radiation presents daily maximums and establishes critical conditions for the formation of photochemical oxidants. The influence of winds on the spatial-temporal distribution of emissions shows that 26% of the air mass come from the N and 15% of NE in the last quarter of year, a situation that could favor the spread of monoterpenes to urban centers near the natural park, which could alter the local atmospheric chemistry with the formation of photochemical oxidants.

Effects of enhanced UV-B radiation on hydroxycinnamic acid derivatives extracted from different cell compartments in the aquatic liverwort Jungermannia exsertifolia subsp. cordifolia.

We examined the responses of ultraviolet-absorbing compounds (UVAC) to enhanced UV-B radiation in the aquatic liverwort Jungermannia exsertifolia subsp. cordifolia for 31 days under laboratory conditions. Samples were exposed to three radiation regimes: P (only photosynthetic radiation), PA (photosynthetic + UV-A radiation) and PAB (photosynthetic + UV-A + UV-B radiation). We measured both the bulk UV absorbance of the methanolic extracts and the levels of individual UVAC. In both cases, the methanol-soluble and the methanol-insoluble, alkali-extractable cell wall-bound fractions were analyzed. The bulk UV absorbance of the soluble fraction was higher than that of the cell wall-bound fraction. The bulk UV absorbances of both fractions increased under enhanced UV-B (PAB regime). Five different hydroxycinnamic acid (HCA) derivatives were found in the soluble fraction and two additional ones in the cell wall-bound fraction, among which only p-coumaroylmalic acid in the soluble fraction and p-coumaric acid in the cell wall-bound fraction increased under enhanced UV-B. The maximum quantum yield of PSII (F(v) /F(m)) decreased and DNA damage (amount of thymine dimers) strongly increased under enhanced UV-B, showing UV-B-induced damage. We conclude that methanol-soluble and cell wall-bound fractions of the liverwort studied have different UVAC, and each individual compound may respond in a different way to UV-B radiation. Thus, the analysis of individual UVAC in both the methanol-soluble and cell wall-bound fractions is advisable to better evaluate the protection mechanisms of liverworts against UV-B radiation. In particular, p-coumaric acid and p-coumaroylmalic acid seem to be especially UV-B responsive and merit further investigation.

Retrospective bioindication of stratospheric ozone and ultraviolet radiation using hydroxycinnamic acid derivatives of herbarium samples of an aquatic liverwort.

We analyzed bulk UV absorbance of methanolic extracts and levels of five UV-absorbing compounds (hydroxycinnamic acid derivatives) in 135 herbarium samples of the liverwort Jungermannia exsertifolia subsp. cordifolia from northern Europe. Samples had been collected in 1850-2006 (96% in June-August). Both UV absorbance and compound levels were correlated positively with collection year. p-Coumaroylmalic acid (C1) was the only compound showing a significant (and negative) correlation with stratospheric ozone and UV irradiance in the period that real data of these variables existed. Stratospheric ozone reconstruction (1850-2006) based on C1 showed higher values in June than in July and August, which coincides with the normal monthly variation of ozone. Combining all the data, there was no long-term temporal trend from 1850 to 2006. Reconstructed UV showed higher values in June-July than in August, but again no temporal trend was detected in 1918-2006 using the joint data. This agrees with previous UV reconstructions.

Seasonal variations in UV-absorbing compounds and physiological characteristics in the aquatic liverwort Jungermannia exsertifolia subsp. cordifolia over a 3-year period.

Temporal physiological variations in relation to environmental factors, in particular to ultraviolet (UV) radiation, have been studied in bryophytes from circumpolar latitudes, but not in mid-latitudes with longer growing seasons. In addition, seasonal and interannual changes in individual UV-absorbing compounds (UVAC) have not been previously studied in bryophytes. To fill these gaps, samples of the aquatic liverwort Jungermannia exsertifolia subsp. cordifolia were collected on a monthly basis during 3 years from a mountain stream in northern Spain. Sclerophylly index, chlorophyll fluorescence, DNA damage, the bulk UV absorbance of methanolic extracts and the concentration of five UVAC (hydroxycinnamic acid derivatives) were measured. Interannual changes were little marked, probably because the 3 years studied were environmentally similar. In summer-autumn, with respect to seasonal variations, newly grown tender young shoots with high F(v)/F(m) accumulated higher amounts of several hydroxycinnamic acid derivatives than in winter-spring. DNA damage was not detected in any of the samples analyzed. p-Coumaroylmalic acid was the compound best associated with radiation changes, and the best model explaining UV-B took into consideration the concentration of this compound and the ozone level. The specific effects of UV radiation could not be separated from the effects caused by other environmental factors, such as global radiation or temperature, because all these variables were correlated. However, indirect evidence strongly suggests that seasonal changes in bulk UV absorbance and p-coumaroylmalic acid are mainly driven by UV radiation. This compound may be a promising physiological variable to be used for UV bioindication.

Physiological changes and UV protection in the aquatic liverwort Jungermannia exsertifolia subsp. cordifolia along an altitudinal gradient of UV-B radiation.

Here we report the effects of a natural altitudinal gradient of UV-B radiation, from 1140 to 1816 m altitude, on the physiology of the aquatic liverwort Jungermannia exsertifolia Steph. subsp. cordifolia (Dumort.) Váña collected in mountain streams. Photosynthetic pigments, net photosynthesis and dark respiration rates, chlorophyll fluorescence, protein concentration, sclerophylly, and UV-absorbing compounds [both global UV absorbance of methanol-extractable UV-absorbing compounds (MEUVAC) and concentrations of five individual compounds] were measured. Two new caffeic acid derivatives were discovered: 5″-(7″,8″-dihydroxycoumaroyl)-2-caffeoylmalic acid and 5″-(7″,8″-dihydroxy-7-O-ß-glucosyl-coumaroyl)-2-caffeoylmalic acid, whereas three additional compounds were already known in other species: p-coumaroylmalic acid, phaselic acid (both compounds in their cis- and trans- forms) and feruloylmalic acid. Most physiological variables changed considerably along the altitudinal gradient, but only six showed significant linear relationships with altitude: MEUVAC levels, the concentrations of the two new secondary compounds, the maximal apparent electron transport rate through PSII (ETRmax) and the maximal non-photochemical quenching (NPQmax) increased with altitude, whereas photoinhibition percentage decreased. A principal components analysis (PCA) was conducted to rank the values of the physiological and ecological variables obtained along the altitudinal transect, showing that those variables correlated with altitude were responsible for the ordination of the sampling points. The liverwort was not adversely affected by the changing conditions along the altitudinal gradient and, in particular, by the increasing UV-B irradiance, probably because the characteristics shown by high-altitude populations may confer tolerance to high UV-B levels. The response to UV-B of the two new compounds suggests that they could be used as indicators of the spatial changes in UV-B radiation.

Estudo comparativo da eficácia de colírios antiinflamatórios não esteróides na manutenção da dilatação pupilar durante a cirurgia de catarata / Comparative efficacy of nonsteroidal antiinflammatory eye drops in maintenance of pupillary dilation during cataract surgery

OBJETIVO: Antiinflamatórios não hormonais, com efeitos antiprostaglandínicos, têm sido usados no pré-operatório de cirurgia de catarata para manutenção da midríase per-operatória. Infelizmente, ainda não existe um antiprostaglandínico ideal. Este é um estudo de corte transversal, randomizado, grupo-placebo e duplo-mascarado, comparando a eficácia do cetorolac de trometamina, flurbiprofeno sódico, diclofenaco sódico e um placebo, hipromelose, quanto à manutenção peroperatória da midríase. MÉTODOS: Cento e dezesseis pacientes, submetidos à extração extracapsular da catarata com implantação de lente intra-ocular, foram separados aleatoriamente em quatro grupos, que receberam a mesma rotina de dilatação e de instilação dos antiprostaglandínicos. O grupo I recebeu cetorolac de trometamina; grupo II, flurbiprofeno sódico; grupo III, diclofenaco sódico e grupo IV, hipromelose, o placebo. Os dados referentes à pupila foram obtidos por meio de questionário objetivo proposto aos cirurgiões no início e ao final da cirurgia. RESULTADOS: Os resultados mostraram diferença significativa entre o grupo I e o placebo quanto à manutenção da dilatação peroperatória. Também foi significativa a diferença entre o grupo I e os demais grupos em relação à suficiência da midríase para o início do ato cirúrgico e para a ocorrência de miose intra-operatória. Não se registrou diferença significante entre o uso de flurbiprofeno e de diclofenaco quando comparados ao placebo para os mesmos parâmetros (p<0,05). CONCLUSÕES: Os resultados mostraram que o cetorolac foi mais eficiente do que os medicamentos utilizados nos demais grupos em relação aos parâmetros testados. Embora se registrem diferenças percentuais entre os resultados alcançados com flurbiprofeno e diclofenaco as diferenças não são estatisticamente significativas. Estudos feitos sobre amostra maior e/ou estudos multicêntricos poderão definir com clareza o papel definitivo dos antiinflamatórios não hormonais na manutenção da midríase peroperatória.